PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018990m
Common NameCISIN_1g018990mg, LOC102622941
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 349aa    MW: 39178.9 Da    PI: 8.8663
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018990mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-1643103156
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 
                        s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g+
  orange1.1g018990m  43 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDNEEAAARAYDLAALKYWGH 103
                        57*******************999955656446*************************997 PP

2AP253.17.8e-17145196155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a+++a+ +++g
  orange1.1g018990m 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAQAYDRAAIEYRG 196
                        89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1343103IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1743112IPR016177DNA-binding domain
PROSITE profilePS5103220.57444110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1644111IPR001471AP2/ERF domain
SMARTSM003807.7E-2844116IPR001471AP2/ERF domain
PRINTSPR003673.5E-64556IPR001471AP2/ERF domain
PfamPF008471.1E-12145196IPR001471AP2/ERF domain
CDDcd000183.58E-25145206No hitNo description
SuperFamilySSF541711.11E-17145206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-18146205IPR001471AP2/ERF domain
SMARTSM003805.7E-26146210IPR001471AP2/ERF domain
PROSITE profilePS5103218.373146204IPR001471AP2/ERF domain
PRINTSPR003673.5E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAKTSRQSQK NTTTNPNNNN TVTTKTKRTR KSVPRDSPPQ RSSIYRGVTR HRWTGRYEAH  60
LWDKNCWNES QNKKGRQVYL GAYDNEEAAA RAYDLAALKY WGHDTILNFP LSNYEEELVE  120
MEGQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAAQAYDRA AIEYRGLNAV TNFDLSKYIK WLRPNNNQNN PKPSNPQQNP NSDDTSPIPK  240
LNQETSSGSE TSAPPPRSGA TAGGSGSASS ALGLLLQSSK YKEMVEKTST DCLSTSSEPG  300
SSHRIFPDDI QTMFFDCQDS SSYTEGDDVL LGDLNPYIFP TFYSELDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493457.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-121AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A067EJX90.0A0A067EJX9_CITSI; Uncharacterized protein
STRINGPOPTR_0003s18350.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-109AP2 family protein